Not long ago, chromatography automation meant strip recorders and peristaltic pumps. Today, few people would consider that to be true automation, and even fewer would settle for binders full of strip-recorder paper reels. Automation is becoming intelligent and in the process is making our workflows smarter. But how close is automation to being as smart as an experienced scientist? Bio-Rad Laboratories spoke with academics, biotechnology R&D scientists, and industrial process engineers about the evolution of chromatography automation â where it started, how far it has come, and what its limits might be.
Early fast protein liquid chromatography (FPLC) systems automated chromatography runs, but setting up a run had a steep learning curve. âIt almost looked like you were programming code,â explains David Grabowski, team leader at R&D Systems. âYou programmed these things in a list orientation. Youâve got parentheses where youâre typing in different column volumes, and then youâve got different variables for that block and for your main block. If you werenât trained, then it was very hard to use.â For a new employee or a student, being able to take advantage of automation meant learning two new skills: the basics of chromatography and how to program that FPLC.
But times have changed, says Edward Ha, chemist at Igenica Inc. âPeople who have never done proteinÂ purification are off and going in under 20 minutes with a canned method that we have on the machine.â The software that was once a hurdle, an additional skill to acquire, is now a great equalizer that arguably makes a chromatography novice smarter.
Automation is making workflows smarter than ever before. Software packages with preprogrammed and customizable protocols not only give scientists instant basic chromatography know-how, but also allow multiple users to use one FPLC without the need to reprogram methods every time.
âWe have different functional units within Igenica,â shares Ha, âand theyâll have to purify different proteins using SEC [size-exclusion chromatography], HIC [hydrophobic interaction chromatography], and affinity purifications such as nickel, protein A, and protein G. And itâs just been a godsend as far as ease of use.â Ha credits autosamplers for streamlining his workflow: âGetting an autosampler on the system was a huge achievement.â
Advances such as air sensors and automatic flow-rate adjustment allow scientists to run columns overnight unsupervised. Time that previously was spent programming runs or supervising a gravity column can be spent more productively, says David Grabowski. âExtending your workday by running columns overnight lets you spend the day analyzing data and running gels. You donât have to waste your time watching little blue lines go up and down.â
Not only does automation make Grabowskiâs team more productive, but it also reduces operator-introduced variability. âBeing first to market is important,â explains Grabowski. âWhen weâre developing a protocol, weâre trying to eliminate as many variables as possible. By automating chromatography, we can eliminate that as one of the variables.â That capability is crucial for his team, which is tasked with developing standard operating procedures for hundreds of proteins every year.
The Importance of Experience
Automation in its present state cannot completely replace experience, points out Meng Guo Gi, a process engineer at Main Luck Pharmaceuticals. He praises features such as buffer scouting and tandem chromatography for streamlining design of experiments (DoE) in his team. But he cautions that current automation options âmay not be suitable for unexpected conditions during process screening.â
Matthew Groves, assistant professor at the University of Groningen, agrees: âOnce Iâve got a system set up, and itâsÂ expressing and crystallizing, then I can use automation to rerun my protocols to test a new compound. But when you play with a new protein, automation is less straightforward.â
Groves adds, âRunning the buffer scouting, you still need to define sensible ranges. You need to define your own ranges. Hypothetically there could be a simple piece of paper I could give my student that reads âPut buffer there and there, press that button, and thatâs it, it will run.â But no software is at that point right now.â
Others agree that automation is not at a point at which it can replace the human eye or brain. âAutomation may not be suitable for unexpected conditions during process screening,â says Gi. âAutomation canât be smarter than the human brain. Some special conditions or proteins need manual analysis and operation.â
Groves believes chromatography systems that can make intelligent decisions are not too far off in the future. âIn 10 years, an ideal automation experiment would be that I have my sample, I know it needs an ion exchange, so I load into the loop. It spends the first 10% of the sample screening through the pHs, establishes the best pH on a small scale, and then runs on the large scale.â
But how far are we from highly automated systems that are as smart as an experienced chromatographer? Where an established protocol is run repeatedly (such as for the purification of variants or biologicals), being able to trust that the machine will do what it is supposed to do seems to be the greatest concern. âIn the past, people did not trust overnight runs. They feared that they would come back in the morning, and their protein would be on the floor because a valve didnât switch at the right timeâ explains Grabowski. Improvements in engineering as well as features such as air sensors, automatic flow-rate adjustment, and increases in back pressure are eliminating the distrust people had of older machines. Instead, when asked about what automation would be most useful for routine purifications, those interviewed were considering front-end automation such as sample and buffer preparation or automated analysis of fractions. âIf there were some automated way to make buffers and filter them, then that would be pretty handy,â says Bruning. Grabowski put being able to âautosample your fractions and run them on a gel so that you can come in in the morning and just have a pictureâ high on his wish list.
However, that picture can grow murky quickly when you consider nonroutine purification workflows. Groves, who developed âlaunch and leaveâ beamline software for crystallographers, explains that âthe advantage of doing it for a beamline was simply that when the data come off, they are computationally very accessible. I can write a script that does exactly the same thing that I would do. Peak finding is slightly more complex for chromatography. You have to worry about peaks not splitting off nicely or developing shoulders or asymmetry.â
Being able to scout buffer pH on 10% of your sample may not be too far off in the future. Fast flow rates and small columns that are directly scalable to large columns for final purification could help accomplish this task.
Finally, chromatography software must be able to identify the peak that contains the protein of interest. âFor a nickel column,â says Bruning, âitâs definitely possible because thereâs one big peak, and you generally take it all.â However, it quickly can become more complicated: âWith a Q column, you have to think about which fractions to go with.â
Jeff Habel, senior scientist in protein technologies R&D at Bio-Rad Laboratories, adds that âthis system of the future will also have to make some qualitative judgments. If Iâm a structural biologist, then I may want only the first half of the peak because you have some contaminant thatâs eluting in the back half. If Iâm an enzymologist, then impurities may not bother me as much. I may want the entire peak.â
Unlike peak-finding, identification of fractions of interest cannot be accomplished computationally. Fractions will have to be assayed to identify which ones contain the protein of interest. An FPLC UV detector could be used to track chromogenic proteins whereas automated gel loading and electrophoresis could be helpful for tracking contaminants. For other purification schemes, automated testing of fractions for desired enzymatic activities may be required.
Although such developments may seem like insurmountable feats of engineering, similar problems already have been solved for small-molecule and peptide chromatography. HPLC can be coupled to mass or NMR spectrometers, permitting direct identification of an analyte, or to diode array and fluorescence detectors to allow detection through postcolumn functionalization. Adapting similar techniques to protein identification can be envisioned easily.
âThe automation system of the future will probably do exactly what Dr. Groves wants,â says Habel. âIt will give you the best conditions for the first, second, and third columns; and then assemble them into a multidimensional chromatography method.â For many applications, he says, chromatography will become like sample preparation. âBeing able to do separation, visualization of your protein, and even quantitation to let you know how much there is, all in an automated way â that becomes a very interesting idea for the laboratory of the future.â
That level of automation â something that is truly intelligent and able to replace human decision and intervention â may not lie in the immediate future. But the advances in automation seen in recent years suggest that the laboratory of the future that Groves and Habel envision may be a little closer than many wouldÂ have envisioned just a decade ago.
Anna Quinlan, PhD, is a technical editor at Bio-Rad Laboratories, 1000 Alfred Nobel Drive, Hercules, CA 94547; 1-510-408-2075; email@example.com. This article was adapted from bioradiations.com.